Books:

1. Kevin P. Rosenblatt, Michael Huebschman, and Harold R. Garner, Construction and Hyperspectral Imaging of Quantum Dot Protein Arrays, in Methods in Molecular Biology, Humana Press, 2009
2. Michael L. Huebschman, Roger A. Schultz, and Harold R. Garner, Hyperspectral Imaging, Review chapter, Encyclopedia of Modern Optics, Academic Press, 2004
3. H.R. Garner, Software and enhancements to gel-based sequencers, BioComputing, a book in the BioFocus Update Series, 2002.
4. K. J. Luebke, R. P. Balog, D. Mittelman and H.R. Garner, Digital Optical Chemistry: A Novel System for the Rapid Fabrication of Custom Oligonucleotide Arrays, a chapter in Microfabricated Sensors, Application of Optical Technology for DNA Analysis, Richard Kordal, Author Usmani and Wai Tak Law, editors, American Chemical Society Publications, 2002. (the book cover featured one of our arrays)
5. G. Miller J. Jacklevic, and H.R. Garner, chapter in Instrumentation for the Genome Project, Annual Reviews of Biomedical Engineering, Joe Jacklevic, editor, 1999.
6. H.R. Garner, “Custom Hardware and Software for Genome Center Operations: From Robotic Control to Databases,” included in Automated Technologies for Genome Characterization, edited by Dr. Tony J. Beugelsdijk, 1997.
7. H.R. Garner, "Automating the PCR Process," Chapter 16 in The Polymerase Chain Reaction, K. Mullis, F. Ferre, R. Gibbs editors, March 1994.
8. S. Clark, G. Evans and H.R. Garner, "Informatics and Automation used in the Physical Mapping of the Genome," Chapter 2 and D.W. Smith, J. Jorgensen, J. P. Greenberg, J. Keller, J. Rogers, H.R. Garner and L. T. Eyck, "Supercomputers, Parallel Processing, and Genome Projects," Chapter 3 in Biocomputing: Informatics and Genome Projects, D. Smith (UCSD) editor, December 1993.
9. H.R. Garner and L. S. Peranich, Chapters 6 and 7 titled "Radial Transport Issues" and "RF Tandem Mirror Modes", of the book Radio Frequency and Cusp Confinement edited by T. Sato, and K. Takayama, I.P.P. - Nagoya, publishers, 1989.
10. Contributions to Chapter 3 of KARATE, Synchronization of Body and Mind, by S. Sugiyama and his students. (1980)

Refereed Journals:

1. Harold R. Garner, Amruta Joshi, Michael L. Huebschman, Surya Shandy, Sandhya N. Mitnala, Brandi Wallek, Season Wong, Dynamic high-resolution patterning for biomedical, materials, and semiconductor research (Invited Paper), SPIE Bios09, Jan. 28, 2009, #7210-1
2. Michael L. Huebschman, Kevin P. Rosenblatt, and Harold R. Garner, Hyperspectral microscopy imaging to analyze pathology samples with multi-colors reduces time and cost, SPIE Bios09, Jan. 28, 2009, #7182-50
3. Tara C. Long, Mounir Errami, Angela C. George, Zhaohui Sun & Harold R. Garner, Responding to Possible Plagiarism, Science, Vol. 323, 1293-1294, March 6, 2009
4. Errami M, Sun Z, Long TC, George AC and Garner HR, Déjà vu: a Database of Duplicate Citations in the Scientific Literature, Nucleic Acids Res. 2009 Jan;37(Database issue):D921-4. PMID: 18757888.
5. Deus HF, Stanislaus R, Behrens C, Wistuba I, Minna JD, Garner HR, Swisher Miller D, Joshi, A and Garner HR, Cells have high resolution light sensing capability that can be used to control aspects of their behavior. IEEE Engineering in Biology and Medicine. January/February, 2009
6. SG, Roth J, Correa A, Broom B, Coombes K, Almeida JS. Data Driven Semantic Integration of Translational Lung Cancer Research at MDAnderson Cancer Center. AMIA Annu Symp Proc. 2008 Nov 6:927. PMID: 18999102
7. Kulkarni V, Errami M, Barber R, Garner HR. Exhaustive prediction of disease susceptibility to coding base changes in the human genome.BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S3. PMID: 18793467
8. Bosnakovski D, Xu Z, Jiang E, Galindo CL, Liu M, Simsek T, Garner HR, Agha-Mohammadi S, Belayew A, Perlingeiro R, and Kyba M, Comparative functional analysis of FSHD candidate genes identifies DUX4-mediated disease-related molecular pathologies. EMBO J. 2008 Oct 2. PMID: 18833193
9. Deus HF, Stanislaus R, Veiga DF, Behrens C, Wistuba II, Minna JD, Garner HR, Swisher SG, Roth JA, Correa AM, Broom B, Coombes K, Chang A, Vogel LH, Almeida JS, A Semantic Web management model for integrative biomedical informatics, PLoS ONE. 2008 Aug 13;3(8):e2946. PMID: 18698353
10. Loadsman JA, Garner HR, Drummond GB, Towards the elimination of plagiarism and redundancy in Anaesthesia and Intensive Care, Anaesth Intensive Care. 2008 Sep;36(5):643-5. PMID: 18853580
11. Wagner M, Li L, Morales J, Galindo C, Garner H, Bornmann W, and Boothman D, Role of c-Abl kinase in MMR-dependent G2 cell cycle checkpoint arrest responses, JBC, 2008 May; PMID 18480061
12. Weil MR, Galindo C, and Garner H, A high resolution survey of the effects of 5 Aza dC treatment on the chromatin state of MCF7 breast cancer cells, in press, IEEE Eng Med Biol Mag.
13. Zhang F, Sha J, Wood TG, Galindo CL, Garner HR, Burkart MF, Suarez G, Sierra JC, Agar SL, Peterson JW, and Chopra AK, Alteration in the activation state of new inflammation-associated targets by phosphlipase A2-activating protein (PLAA), Cell Signal. 2008 May;20(5):844-61 PMID: 18291623
14. Moen AT, Yeager LA, Lawrence WS, Ponce C, Galindo CL, Garner HR, Baze WB, Suarez G, Peterson JW, Chopra AK, Transcriptional profiling of murine organ genes in response to infection with Bacillus anthracis Ames spores, Microbial Pathogenesis, 2008 Apr;44(4):293-310. PMID: 18037264
15. Errami M, Galindo CL, Tassa AT, DiMaio JM, Hill JA, and Garner HR, Doxycycline Attenuates Isoproterenol- and Transverse Aortic Banding- induced Cardiac Hypertrophy in Mice, J Pharmacol Exp Ther. 2008 Mar;324(3):1196-203 PMID: 18089841
16. Marthandan N, Klyza S, Li S, Kodadek T, and Garner HR, Construction and Evaluation of an Automated Light Directed Protein-Detecting Microarray Synthesizer, IEEE Trans Nanobioscience. 2008 Mar;7(1):20-7 PMID:18334452
17. Errami M and Garner HR, A tale of two citations, Nature 2008 Jan 24;452(7177):397-9 PMID 18216832
18. Errami M,.Hicks JM, Fisher W, Trusty D, Wren JD, Long TC and Garner HR, Deja vu A Study of Duplicate Citations in Medline, Bioinformatics. 2008 Jan 15;24(2):243-9. PMID 18056062
19. Cabrera JA, Hoggatt-Krumwiede K, Calver L, Garner HR, Expanding Researchers’ Understanding of Effective Corporate Identity Design for Company Spin Outs, JBC 2007 33(3) E62-E67
20. Ragucci TJ, Cisar A, Huebschman ML and Garner HR, Film Strain Measurement through Hyperspectral Polarimetry, Proceedings of American Institute of Aeronautics and Astronautics, 2007
21. Sierra JC, Suarez G, Sha J, Foltz SM, Popov VL, Galindo CL, Garner HR, Chopra AK., Biological characterization of a new type III secretion system effector from a clinical isolate of Aeromonas hydrophila-part II, Microb Pathog. 2007 Oct;43(4):147-60. PMID: 17368824
22. German DC, Gurnani P, Nandi A, Garner HR, Fisher W, Diaz-Arrastia R, O’Suilleabhain P, Rosenblatt KP, Serum biomarkers for Alzheimer's disease: proteomic discovery, Biomed Pharmacother. 2007 Aug;61(7):383-9. PMID: 17614251
23. Shah JK, Garner HR , White MA, Shames DA, Minna JD, sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open source siRNA database, BMC Bioinformatics. 2007 May 31;8:178. PMID: 17540034
24. Burkart MF, Wren JD, Herschkowitz JI, Perou CM and Garner HR, Clustering of Microarray-Derived Gene Lists through Implicit Literature Connections, Bioinformatics. 2007 Aug 1;23(15):1995-2003. PMID: 17537751
25. Fisher WG, Rosenblatt KP, Fishman DA, Whiteley GR, Mikulskis A, Kuzdzal SA, Lopez MF, and Garner HR, A Robust Biomarker Discovery Pipeline for High Performance Mass Spectrometry Data, J Bioinform Comput Biol. 2007 Oct;5(5):1023-45. PMID: 17933009
26. Ng KW and Garner HR Nome della Proteina: A protein identification resolution database, IEEE Eng Med Biol Mag. 2007 Jul-Aug;26(4):70-2. PMID: 17672234
27. Errami M, Wren JD, Hicks JM and Garner HR, eTBLAST: A web server to identify expert reviewers, appropriate journals and similar publications, Nucleic Acids Res. 2007 Jul;35(Web Server issue):W12-5. PMID: 17452348
28. Laidlaw J, Ng KW, Garner HR, Ranganathan R, Fondon III JW, Elevated basal slippage mutation rates among the Canidae, J Hered. 2007;98(5):452-60 PMID: 1747958
29. Fadl AA, Galindo CL, Sha J, Zhang F, Garner HR, Wang HQ, and Chopra AK, Global Transcriptional Responses of Wild-type Aeromonas hydrophila and its Virulence-deficient Mutant in a Murine Model of Infection, Microb Pathog. 2007 May-Jun;42(5-6):193-203 PMID: 17368824
30. Crozier S and Garner HR, Ensemble-based RNA secondary structure characterization, IEEE Eng Med Biol Mag. 2007 Jan-Feb;26(1):72-86. PMID:17278775
31. Garner HR, Hicks JM, Wren JD and Errami M, Medline: the knowledge buried therein, its potential and cost, IEEE Eng Med Biol Mag. 2007 May-Jun;26(3):73-4. PMID: 17549924
32. Fondon III JW and Garner HR, Detection of length-dependent effects of tandem repeat alleles by 3-D geometric decomposition of craniofacial variation, Development, Genes and Evolution 217:79–85, 2007. PMID: 17066275
33. Khandheria P and Garner HR, Developing a Modern Web Interface for Database-Driven Bioinformatics Tools, IEEE Engineering in Biology and Medicine, 2007 Mar-Apr;26(2):96-8. PMID: 17441614
34. Lewis J, Ossowski S, Hicks J, Errami M., and Garner HR Text Similarity: an alternative way to search MEDLINE, Bioinformatics, 2006 Sep 15;22(18):2298-304. PMID: 16926219
35. Comer JE, Galindo CL, Zhang F, Wenglikowski AM, Bush KL, Garner HR, Peterson JW, and Chopra AK, Murine Macrophage Transcriptional and Functional Responses to Bacillus anthracis Edema Toxin, Microb Pathog. 2006 Aug-Sep;41(2-3):96-110. PMID: 16846716
36. Flood E, Kumar RS, Shah R, Amos Q, Wren JD, Shohet RV, Garner HR, Melatonin administration does not affect isoproterenol-induced LVH, IEEE Eng Med Biol Mag. 2006 May-Jun;25(3):84-7. PMID: 16764435
37. Ferguson DA, Muenster MR, Zang Q, Spencer JA, Schageman JJ, Lian Y, Garner HR, Gaynor RB, Huff JW, Pertsemlidis J, Schorge J, Becerra C,. Williams NS, Graff JM, Selective Identification of Secreted and Transmembrane Breast Cancer Markers using Escherichia coli Ampicillin Secretion Trap, Cancer Res. 2005 Sep 15;65(18):8209-17. PMID: 16166296
38. Munjuluri B, Huebschman ML, Garner HR, " Rapid hologram updates for real-time volumetric information displays," Appl Opt. 2005 Aug 20;44(24):5076-85 PMID: 16121792
39. Geho D, Lahar N, Gurnani P, Huebschman M, Herrmann P, EspinaV, Shi A, Wulfkuhle J, Garner HR, Petricoin III E, Liotta LA, and Rosenblatt KP, Pegylated, Steptavidin-Conjugated Quantum Dots Are Effective Detection Elements for Reverse Phase Protein Microarrays, ACS Journal Bioconjugate Chemistry, 2005 May-Jun;16(3):559-66 PMID: 15898722
40. Li S, Marthandan N, Bowerman D, Garner HR and Kodadek T, Photolithographic Synthesis of Cyclic Peptide Arrays Using a Differential Deprotection Strategy, Chem Commun (Camb). 2005 Feb 7;(5):581-3. PMID: 15672142
41. Huebschman ML, Munjuluria B, Hunt J, Garner HR, Holographic visualization with micromirror devices, SPIE, 2005 Jun 16(1)
42. Lian Y, Garner HR, Evidence for the regulation of alternative splicing via complementary DNA sequence repeats, Bioinformatics, 2005 Apr 15;21(8):1358-64. Epub 2005 Jan 26. PMID: 15673565
43. Mizumoto N, Hui F, Edelbaum D, Weil MR, Wren JD, Shalhevet D, Matsue H, Liu L, Garner HR, Takashima A: Differential activation profiles of multiple transcription factors during dendritic cell maturation. J Invest Dermatol. 2005 Apr;124(4):718-24. PMID: 15816829
44. Wren JD, Chang JT, Pustejovsky J, Adar E, Garner HR, Altman RB, Biomedical Term Mapping Databases, Nucleic Acids Res. 2005 Jan 1;33 Database Issue PMID: 15608198
45. Fondon III JW, and Garner HR, Molecular origins of rapid and continuous morphological evolution, Proc Natl Acad Sci U S A. 2004 Dec 28;101(52):18058-63. Epub 2004 Dec 13. PMID: 15596718
46. A.E. Wandstrat, C. Nguyen, N. Limaye, Y. Yim, A. Chan, A. Pertsemlidis, H. Garner, L. Morel, and E.K. Wakeland, Association of extensive polymorphisms in the SLAM/CD2 gene cluster with murine lupus, Immunity. 2004 Dec;21(6):769-80 PMID: 15589166
47. Pertsemlidis A and Garner HR, Text Comparison Based on Dynamic Programming, IEEE Engineering in Biology and Medicine, Nov./Dec., 2004, Vol. 23, No. 6, pgs. 66-71. PMID: 15688594
48. Jonathan D. Wren, Harold R. Garner, Data-mining analysis suggests an epigenetic pathogenesis for type 2 diabetes, JBB, pgs. 104-112, 2005 PMID: 16046815
49. Beloludtsev Y, Bowerman D, Weil MR, Marthandan N, Balog R, Luebke L, Lawson J, Johnson SA, Lyons CR, O’Brien K, Garner HR, Powdrill TF, Organism Identification Using a Genome Sequence-Independent Universal Microarray Probe Set, Biotechniques. 2004 Oct;37(4):654-8, 660 PMID: 15517977
50. M.L. Huebschman, J. Hunt, B. Munjuluri, A. Takashima and H.R. Garner, Design and performance of a variable spectrum synthesizer, Journal of Review of Scientific Instruments, November, 2004, Volume 75, Issue 11, 4845-4855. Also appeared in The Virtual Journal of Biological Physics Research -- November 15, 2004, Volume 8, Issue 10
51. Ng KW, Lawson J and Garner HR, PathoGene: a pathogen coding sequence discovery and analysis resource, Biotechniques. 2004 Aug;37(2):218, 220-2. PMID: 15335212
52. Weil MR, Widlak P, Minna JD and Garner HR, Global survey of chromatin accessibility using DNA microarrays, Genome Res. 2004 Jul;14(7):1374-81. PMID: 15231753
53. Cronin EM, Thurmond FA, Bassel-Duby R, Williams RS, Wright WE, Nelson KD and Garner HR, Protein coated poly (L-lactic acid) fibers provide a substrate for differentiation of human skeletal muscle cells, J Biomed Mater Res. 2004 Jun 1;69A(3):373-81. PMID: 15127383
54. Schageman J, Horton CJ, Niu S, Garner HR and Pertsemlidis A, ELXR: a resource for rapid exon-directed sequence analysis., Genome Biol. 2004;5(5):R36. Epub 2004 Apr 28. PMID: 15128450
55. Li S, Bowerman D, Marthandan N, Klyza S, Luebke KJ, Garner HR, and Kodadek T, Photolithographic Synthesis of Peptoids, J Am Chem Soc. 2004 Apr 7;126(13):4088-9. PMID: 15053581
56. Luebke KF, Carter DH, Garner HR and Brown KC, Patterning Adhesion of Mammalian Cells with Visible Light, Tris(bipyridyl)ruthenium(II) Chloride, and a Digital Micromirror Array, Journal of Biomedical Materials Research 2004 March 15; 68A(4)696-703. PMID: 14986324
57. Wren JD and Garner HR, Shared Relationship Analysis: A Method to Quantitatively Evaluate Cohesion and Commonalities in a Literature-Derived Relationship Network, Bioinformatics, 2004 Jan 22;20(2):191-198. PMID: 14734310
58. Wren JD, Bekeredjian R, Stewart JA, Shohet RV and Garner HR, Knowledge discovery by automated identification and ranking of implicit relationships, Bioinformatics. 2004 Feb 12;20(3):389-98. PMID: 14960466
59. Horvath MM, Fondon III JW, and Garner HR, Low hanging fruit: A subset of human cSNPs is both highly non-uniform and predictable, Gene. 2003 Jul 17;312:197-206. Erratum in: Gene. 2003 Nov 27;320:191. PMID: 12909356
60. Garner HR, Instrumentation for Genome Analysis (and beyond) based on the TI Digital Micromirror Device, proceedings of the IEEE International Reliability Physics Symposium, Dallas, TX, April, 2003.
61. Schageman JJ, Ferguson DA, Zang Q, Spencer JA, J. Huff W, Graff JM, Lian Y, Garner HR, and Pertsemlidis A, Reading the Fine Print of the Human Genome, IEEE Engineering in Biology and Medicine, 2003, Mar-Apr 22(2):105-8. PMID: 12733468
62. Tang F, Flood EM, Pertsemlidis A, Garner HR, SNPCEQer II: the integrated detection and analysis of SNPs in DNA sequences, Applied Bioinformatics 2003: 2(3) 151-154 PMID: 15130800
63. Huebschman ML, Munjuluri B, and Garner HR, Dynamic Holographic 3-D Image Projection, Optics Express, Vol. 11, No. 5, 437-445, March 2003.
64. Garner HR and Pertsemlidis A, Applied Computational Biology, invited review, BioSilico, January, 2003.
65. Peters, D, Barber, R., Flood, E, Garner, H. and O’Keefe, G, Methodological Quality and Genotyping Reproducibility in Studies of the Tumor Necrosis Factor –308 G?A SNP and Bacterial Sepsis: Implications for Studies of Complex Traits, American Journal of Respiratory and Critical Care Medicine, Vol. 31, No. 6, 1691-1696, 2003. PMID: 12794406
66. Luebke KJ, Balog RP, and Garner HR, Prioritized Selection of Oligonucleotide Probes for Efficient Hybridization to RNA Transcripts, Vol. 31, No. 2, 750-758, Nucleic Acids Research, 2003. PMID: 12527785
67. Pertsemlidis A, Prikhodko N, and Garner HR. Text comparison based on dynamic programming. Proceeding of the Pacific Symposium on Biocomputing, Kauai, Hawaii, January 3-7, 2003.
68. Flood EM , Tang F, Horvath MM, Pertsemlidis A, Garner HR, SNPCEQer – Detecting Single Nucleotide Polymorphisms in Sequences Generated by the Beckman CEQTM2000 DNA Analysis System, BioTechniques, Vol. 33, 818-820, September, 2002. PMID:12398190
69. Garner HR, Balog RP and Luebke KJ, The Evolution of Custom Microarray Manufacture, IEEE Engineering in Biology and Medicine, July/August 21(4)123-5, 2002. PMID: 12222110
70. Huebschman ML, Schultz RA, and Garner HR, Characteristics and Capabilities of the Hyperspectral Imaging Microscope, IEEE Engineering in Biology and Medicine, Vol. 4, 104-117, July/August, 2002. PMID: 12222107
71. Wren, JD and Garner, HR, Heuristics for Identification of Acronym-Definition Patterns within Text: Towards an Automated Construction, Methods of Information in Medicine, Vol. 41, 426-434, 2002. PMID: 12501816
72. Balog RP, Y. de Souza YE, Tang HM, DeMasellis GM, Gao B, Avila A, Gaban DJ, Mittelman D, Minna JD, Luebke KJ, and Garner HR, Parallel Assessment of CpG Methylation by Two-Color Hybridization with Oligonucleotide Arrays, Analytical Biochemistry, Vol. 309, 301-310, 2002. PMID: 12413464
73. Weil MR, Macatee T, and Garner HR, Toward a universal standard: comparing two methods for standardizing spotted microarray data, Biotechniques, 32(6), June 2002. PMID: 12074161
74. Wren JD, Mittleman D, Garner HR, SIGNAL – Sequence Iterative GeNomic AnaLysis, Computer Methods and Programs in Biomedicine 2002 May; 68(2): 177-181 PMID:11932033
75. Schageman J, Basit M, Gallardo T, Shohet RV and Garner HR, MarC-V: A Spreadsheet-Based Tool for Analysis, Normalization, and Visualization of Single cDNA Microarray Experiments, Biotechniques 32:338-344, Feb. 2002. PMID: 11848411
76. Wren JD, Joslin J, Kulkarni A, Butow R, Garner HR, Cross-hybridization on PCR-spotted microarrays, IEEE Engineering in Biology and Medicine, Vol. 21, 71-75, March, 2002. PMID: 12012609
77. Kulkarni, D. Mittelman, N. Williams, A. Pertsemlidis, Y. Lian, H. R. Garner, ARROGANT: an application to manipulate large gene collections, Vol. 18, 1410-1417, BioInformatics, 2002. PMID: 12424110
78. Talaat AM, Howard ST, Hale W 4th, Lyons R, Garner HR and Johnston SA, Genomic DNA Standards For Gene Expression Profiling of Mycobacterium tuberculosis, Nucleic Acids Research, Vol. 30, No. 20, 2002. PMID: 12384606
79. Forgacs, E., Wren, J., Kamibayashi, C., Kondo, M., Xu, L., Markowitz, S., Tomlinson, G., Muller, C., Gazdar, A., Garner, H., and Minna, J. Searching for microsatellite mutations in coding regions in lung, breast, ovarian, and colorectal cancers, Oncogene 20:1005-1009, 2001. PMID: 11314036
80. Lander ES, et. al. (~3,000 authors), Initial sequencing and analysis of the human genome, Nature, Feb15;409(6822):680-921. (My name and that of Chris Davies, Asst. Director and Sequencing manager of the UTSW genome center were left off. Corrected in errata submitted by NIH/NHGRI to Nature.) PMID: 11237011
81. Epstein CB, Waddle JA, Hale W 4th, Davé V, Thornton J, Macatee TL, Garner HR and Butow RA, Genome-wide Responses to Mitochondrial Dysfunction, Mol. Bio. of the Cell, Vol. 12, 297-308, Feb. 2001. PMID: 11179416
82. Schultz RA, Nielsen T, Zavaleta JR, Ruch R, Wyatt R and Garner HR, Hyperspectral Imaging: A Novel Approach For Microscopic Analysis, Vol. 43, pgs. 239-247, Cytometry, 2001. PMID: 11260591
83. Wren JD, Forgacs Eva, Fondon JW 3rd, Pertsemlidis A, Cheng SY, Gallardo T, Williams RS, Shohet RV, Minna JD, Garner HR, Repeat Polymorphisms Within Gene Regions: Phenotypic and Evolutionary Implications, American Journal of Human Genetics, Vol. 67, No. 2, 345-356, Aug. 2000. PMID: 10889045
84. Kukanskis KA, Siddiquee Z, Shohet RV, Garner HR, " A mix of sequencing technologies for sequence closure: An example," BioTechniques, Vol. 28, No. 4, 630-635, 2000. PMID: 10769739
85. Miller GA, Belosludtsev Y, Murphy TH, Garner HR, “Transparent Electronically Controlled DNA Chips,” 2:3, 215-220, Biomedical Microdevices, 2000.
86. Wistuba II, Behrens C, Virmani AK, Mele G, Milchgrub S, Girard L, Fondon JW 3rd, Garner HR, McKay B, Latif F, Lerman MI, Lam S, Gazdar AF, Minna JD., High Resolution Chromosome 3p Allelotyping of Human Lung Cancer and Preneoplastic/Preinvasive Bronchial Epithelium Reveals Multiple, Discontinuous Sites of 3p Allele Loss and Frequent Breakpoints, Cancer Research 60, 1949-1960, April, 2000. PMID: 10766185
87. Pertsemlidis A, Miller B, Pande A, Schilling P, Wei MH, Lerman MI, Minna JD and Garner HR, "PANORAMA - An integrated web based sequence analysis tool and its role in gene discovery," Genomics Dec 15;70(3):300-6. PMID: 11161780
88. Liao B, Hale W, Epstein CB, Butow RA, Garner HR “MAD: a suite of tools for microarray data management and processing”, BioInformatics, 2000 Oct;16(10):946-7
89. K. Kukanskis, J. Elkind, J. Melendez, T. Murphy, G. Miller and H.R. Garner, , "Detection of DNA Hybridization Using the Texas Instruments, Inc. TISPR-1 Surface Plasmon Resonance Biosensor," Analytical Biochemistry 274, 7-17,1999. PMID: 10527491
90. F. S. Collins, A. Patrinos, E. Jordan, A. Chakravarti, R. Gesteland, L. Walters, and members of the DOE and NIH planning groups, "New Goals for the U. S. Human Genome Project: 1998-2003, Science, 1998 Oct 23;282(5389):682.9. PMID: 9784121
91. O'Brien KM, Schageman JJ, Major TH, Evans GA, Garner HR. “Improving Read Lengths by Recomputing the Matrics of Model 377 DNA Sequencers,” BioTechniques, 1998 Jun;24(6):1014-6. PMID: 9631196
92. Fondon JW 3rd, Mele GM, Brezinschek RI, Cummings D, Pande A, Wren J, O'Brien KM, Kupfer KC, Wei MH, Lerman M, Minna JD, Garner HR., “Computerized polymorphic marker identification: experimental validation and a predicted human polymorphism catalog.”, Proc. Nat. Acad. Sci USA. 1998, Jun 23;95(13):7514-9 PMID: 9636181
93. Huang H and Garner HR, “Gene Alert - A Homology Search Results Keyword Parser,” IEEE Eng Med Biol Mag. 1998 Mar-Apr;17(2):119-22, 128 PMID: 9548090
94. Rayner S, Brignac S, Bumeister R, Belosludtsev Y, Ward T, Grant O, O'Brien K, Evans GA, Garner HR., “MerMade: an oligodeoxyribonucleotide synthesizer for high throughput oligonucleotide production in dual 96-well plates.”, Genome Res. 1998 Jul;8(7):741-7 PMID: 9685322
95. O'Brien KM, Schageman JJ, Evans GA, Garner HR., “Reconstructing Fragmented Gel Files Created by Model 377 DNA Sequencers”, BioTechniques, 1998 Jun;24(6):1004-5. PMID: 9631194
96. O'Brien KM, Ironside MA, Athanasiou MC, Basit MA, Evans GA, Garner HR., “Correcting Data Shifts in Gel Files Created by Model 377 DNA Sequencers”, BioTechniques, 1998 Jun;24(6):1002-3. PMID: 9631193
97. K. M. O’Brien, J. Wren, V. K. Dave, D. Bai, R. D. Anderson, S. Rayner, G. A. Evans, A. E. Dabiri, and H. R. Garner, “ASTRAL, a Hyperspectral Imaging DNA Sequencer,” Review of Scientific Instruments, Vol. 69, No. 5, May, 1998.
98. P. Li, C. J. Davies, D. North, P. Schilling, G. A. Evans, and H. R. Garner, Supercomputing in genomic sequencing: Optimization of BLAST and other sequence algorithms for high speed parallel processing, Scientific Computing and Automation, November, 1997.
99. H.R. Garner, Viewpoint: The Human Genome Project: on target for 2006, IEEE Spectrum, January, 1997, pgs. 99-102.
100. K. O’Brien, T. Fondon, G. A. Evans and H. R. Garner, “Rescuing Corrupted ABI-type gel files,” BioTechniques, Vol. 22, No. 6, 1162-1163, 1997.
101. H.R. Garner, Viewpoint: The Human Genome Project: on target for 2006, IEEE Spectrum, pgs. 100-101, Jan. 1997.
102. P. Li, K. Kupfer, C. Davies, D. Burbee, G. A. Evans, and H. R. Garner, “PRIMO: A Primer Design Program that Applies Base Quality Statistics for Automated Large-Scale DNA Sequencing,” Genomics 40, 476-485, 1997.
103. T.B. Shows, M. Alders, S. Bennett, D. Burbee, P. Cartwright, S. Chandrasekharappa, P. Cooper, A. Courseaux, C. Davies, M.-D. Devignes, P. Devilee, R. Elliott, G. Evans, J. Fantes, H. Garner, P. Gaudray, D.S. Gerhard, M. Gessler, M. Higgins, H. Hummerich, M. James, J. Lagercrantz, M. Litt, P. Little, M. Mannens, D. Munroe, N. Nowak, S. O’Brien, N. Parker, M. Perlin, L. Reid, C. Richard, M. Sawicki, D. Swallow, R. Thakker, V van Heyningen, E. van Schothorst, I. Vorechovsky, C. Wadelius, B. Weber, and B. Zabel, Report of the fifth international workshop on human chromosome 11 mapping, Cytogenetics and Cell Genetics, 74:1-56 (1996)
104. H.R. Garner, “Fluorometer to Spectrophotometer Converter,” Review of Scientific Instruments, 67(7), July 1996.
105. H.R. (Skip) Garner, "Can informatics keep pace with molecular biology?" Laboratory Information Management 26, pgs. 69-77, November, 1995.
106. J. Quackenbush, C. Davies, J. M. Baliks, J. V. Khristich, K. Diggle, Y. Marchuck, J. Tobin, S. P. Clark, A. Rodkins, S. Marcano, A. C. Churukian, J. S. Hutchinson, S. Probst, L. Romberg, Y. H. Wei, N. J. Nowak, H. R. Garner, M. W. Smith, L. Selleri, and G. A. Evans, “An STS Content Map of Human Chromosome 11: Localization of 910 YAC Clones and 109 Islands,” Genomics, 29, 512-525, 1995.
107. H.R. Garner, D.M. Lininger and B. Armstrong, "High-throughput PCR," BioTechniques, Vol. 14, No. 1, pg. 112-115, January, 1993.
108. H.R. Garner, B. Armstrong and D. Kramarsky, "Dr. Prepper - An Automated DNA Extraction and Purification System," Scientific Computing & Automation, Vol. 9, No. 4, pg 61 - 68, March, 1993.
109. H.R. Garner and T. Ohkawa, "High Frequency Acoustic Interaction of Resonant Systems Using SAWs," IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, Vol. 40, No. 1, January 1993.
110. H.R. Garner, B. Armstrong and D. Kramarsky, "High-Throughput DNA Prep System," GATA, 9(5-6):127-133, 1992.
111. B. Armstrong and H.R. Garner, "Analysis of Protocol Variations on DNA Yield," GATA, 9(5-6):134-139, 1992.
112. H.R. Garner, A.C. Lewis, and T. Ohkawa, "Measurement of the Microwave Absorption for Small Samples in a Coaxial Line," IEEE Transactions in Microwave Theory and Techniques 39(5), May 1991.
113. H.R. Garner and A.C. Lewis, Variable Frequency Cavity for Measurements of Complex Permittivity and Permeability, IEEE Transactions in Microwave Theory and Techniques 1991
114. H.R. Garner, A.C. Lewis, and M.K. Thomas, "Micropipette Adaptor for Spectrophotometers," Rev. Sci. Instrum. 61(5), May 1990.
115. H.R. Garner, J.L. Kaae, R.B. Stephens, A.C. Lewis, A.J. Lieber, W.J. DeHope, "Measurement of Permittivity at Elevated Temperatures Using Cavity Perturbation and CO2 Laser Irradiation," Rev. Sci. Instrum. 61(7), July 1990.
116. H.R. Garner, T. Ohkawa, O. Tuason, and R.L Lee "Microwave Absorption in the Hydration Layers of Polymers," Phys. Rev. A. 42(12), Dec. 1990.
117. H.R. Garner, A.M. Howald, L.S. Peranich, A.W. Leonard, T. Ohkawa, J. D'Aoust, "An Inexpensive X-ray Source Based on an Electron Cyclotron," Rev. Sci. Instrum. 61(2), Feb. 1990.
118. T.E. Evans, K. Adati, A. Ando,D.R. Baker, J. deGrassie, H.R. Garner, Y. Hamada, , S. Hidekuma, A.M. Howald, K. Ida, O. Kaneko, K. Kawahata, S. Kitagawa, T. Kumazawa, T. Kuroda, A.W. Leonard, K. Masai, K. Matsuura, A. Mohri, S. Morita, Y. Ogawa, S. Okamura, T. Ozaki, L.S. Peranich, M. Sakamoto, K.N. Sato, S. Tanahashi, K. Toi, Y. Tomita, T. Watari, H. Yamada, K. Yamazaki, the ICRF, NBI and NTX Operations groups, "Resonant Helical Divertor Experiment Using Large m/n = 3/1, 4/1 Islands in the JIPP T-IIU Tokamak," 12th International Conference on Plasma Physics and Controlled Nuclear Fusion Research, Nice, 1988, IAEA-CN-50, pgs. 347-352.
119. K. Adati, R. Kumazawa, H. Fujita, T. Oda, K. Kadota, K. Takiyama, M. Hamamoto, T. Ohgo, T. Watanabe, T. Aoki, J. Fujita, S. Hidekuma, T. Kawamoto, H. Masumoto, K. Nishimura, S. Okamura, T. Sato, H.R. Garner, A.M. Howald, "Potential Formation in an RF-Plugged Axisymmetric Mirror-Cusp Device," 12th International Conference on Plasma Physics and Controlled Nuclear Fusion Research, Nice, 1988, IAEA-CN-50.
120. R. Kumazawa, K. Adati, T. Aoki, H. Fujita, S. Hidekuma, T. Kawamoto, H. Nishimura, S. Okamura, T. Sato, T. Hatori, H.R. Garner, A.M. Howald, and B. J. Leikind, "Scaling Studies on RF Plugging Potential in the Cusp-Anchored Mirror Device, RFC-XX-M,", J. Phys. Soc. Japan, Vol. 57, No. 3 (1988).
121. T.E. Evans, J.S. deGrassie, H.R. Garner, A.W. Leonard, N. Ohyabu, L S. Peranich, A. Mohri, Y. Hamada, K. Ida, O. Kaneko, K. Kawahata, S. Kitagawa, T. Kuroda, K. Madai, S. Morita, Y. Ogawa, S. Okamura, K.N. Sato, M. Sakamoto, H. Yamada, K. Yamazaki, T. Watari, the ICRF, NBI and JIPP T-IIU Operations groups and F. Karger, " Resonant Helical Divertor Experiments in Ohmic and Auxiliary Heated JIPP T-IIU Plasmas," Journal of Nuclear Materals, (8th International Conference on Plasma Surface Interactions, May 2-6, 1988).
122. H. Fujita, R. Kumazawa, A.M. Howald, S. Okamura, T. Sato, K. Adati, H.R. Garner and K. Nishimura, "Potential Formation in the Plasma Confinement Region of a Radio-Frequency Plugged Linear Device," J. Phys. Soc. Japan 57, 504(1988).
123. T. Sato, R. Kumazawa, S. Okamura, K. Adati, T. Aoki, H. Fujita, S. Hidekuma, T. Kawamoto, H. Masumoto, K. Nishimura, T. Hatori, K. Takayama, H.R. Garner, H. D. Price, A.M. Howald, B. J. Leikind, H. Ikezi, P.B. Parks, and P. Andrews, "Radiofrequency Plugging and Tandem Mirror Experiments in a Cusp-Anchored Mirror Device," in Plasma Physics and Controlled Nuclear Fusion Research 1986, Vol. 2, page 343, IAEA, Vienna (1987).
124. T. Sato and the RFC-XX-M Group, "International Cooperation on the RFC-XX-M Experiment," Plasma Research, Vol. 3, No. 2 (1986), in Japanese.
125. S. Okamura, K. Adati, T. Aoki, D.R. Baker, H. Fujita, H.R. Garner, K. Hattori, S. Hidekuma, T. Kawamoto, R. Kumazawa, Y. Okubo, T. Sato, " Plasma Production with Rotating Ion Cyclotron Waves Excited by Nagoya Type-III Antennas in RFC-XX," Nuclear Fusion Vol. 26, No. 11 (1986)
126. H.R. Garner, H.D. Price, T. Sato, K. Adati, T. Aoki, H. Fujita, K, Hattori, S. Hidekuma, T. Kawamoto, R. Kumazawa, S. Okamura, Y. Okubo, "Azimuthal Non-Uniformities Induced by ICH and ECH in the RFC-XX Mirror Plasma,", Nuclear Fusion Vol. 26, No. 5 (1986).
127. K. Muraoka, K. Uchino, Y. Itsumi, M. Hamamoto, M. Maeda, M. Akazaki, T. Kawamoto, R. Kumazawa, S. Okamura, K. Adati, T. Aoki, H. Fujita, K. Hattori, S. Hidekuma, Y. Okubo, T. Sato, H.R. Garner, D. R. Baker, H. D. Price, 'Measurements of Atomic Hydrogen-Density Profiles in RFC-XX-M Machine Using Laser Fluorescense Spectroscopy at the H-alpha Transition," Jap. Journal of Appl. Phys. Vol. 24, No. 1 (1985).
128. R. Kumazawa, K. Adati, T. Aoki, H. Fujita, K. Hattori, S. Hidekuma, T. Kawamoto, K. Nishimura, S. Okamura, Y. Okubo, T. Sato, T. Hatori, H.R. Garner, H.D. Price, "Sloshing Ion Distribution Produced by ICRF in an Axisymmetric Mirror-Cusp Device, RFC-XX-M," Proc. 12th European COnference on Controlled Fusion and Plasma Physics, Budapest, 1985, Part I, p. 504.
129. S. Okamura, R. Kumazawa, K. Adati, T. Aoki, H. Fujita, K.Hattori, S. Hidekuma, T. Kawamoto, Y. Okubo, T. Sato, T. Hattori, K. Muraoka, K. Uchino, M. Maeda, M. Hamamoto, K. Sunako, K. Takayama, D. R. Baker, H.R. Garner, H.D. Price, P.B. Parks, A.M. Sleeper, R. Itatani, Y. Yasaka, " Plasma Heating, Confinement and Stabilization Experiments in an Axisymmetric Mirror-Cusp Device," in Plasma Physics and Controlled Nuclear Fusion Research 1984, Vol. 2, page 337, IAEA.
130. D.R. Baker, H.R. Garner, P.B. Parks, A.M. Sleeper, S. Okamura, K. Adati, T. Aoki, H. Fujita, K. Hattori, T. Kawamoto, R. Kumazawa, Y. Okubo, and T. Sato, "Stability studies of a hollow plasma in the double cusp experiment,", Phys. Fluids 27 (11), Nov. 1984.
131. H.R. Garner and T. Aoki, "Pulse Discharge Cleaning for Open Ended Systems," Fusion Technol. (USA), Vol. 9, No. 3 (Dec. 1984).
132. K. Muraoka, M. Maeda, T. Okada, C. Honda, M. Hamamoto, K. Uchino, T. Kajiwara, Y. Matsuda, Y. Itsumi, M. Akazaki, T. Kawamoto, R. Kumazawa, S. Okamura, H.R. Garner and RFC-XX-M Group, " Developments and Applications of Laser-Fluorescence Studies of Particle-Behaviors in Plasma-Surface Interactions," Jour. Nuc. Matls. No. 128&129 (1984)
133. J.D. Callen, R.N. Dexter, C.M. Fortgang, H.R. Garner, A.G. Kellman, D.W. Kerst, M.W. Phillips, S.C. Prager, J.C. Sprott, E.J. Strait, J.C. Twichell, M.C. Zarnstorff, "High-Beta Neoclassical Current and Stability Experiments," in Plasma Physics and Controlled Nuclear Fusion Research 1983, Vol. 2, page 143, IAEA.
134. A.B. Ehrhardt, H.R. Garner, G.A. Navratil, and R.S. Post, "Cross-field diffusion and fluctuation spectra in the levitated octupole in the presence of a toroidal field," Phys. Fluids 24(10), October 1981.
135. A.Y. Wong, R.W Schumacher, J. Ferron, G. Dimonte, M. Fukao, M.Q. Tran, K. Yatsu, J.R. Conrad, H. Garner, J.A. Halle, A. Kellman, D. Kerst, M.W. Phillips, R.S. Post, S.C. Prager, E.A. Rose, J.C. Sprott, E.J. Strait, R.J. Torti, M. Zarnstorff, " High-Beta Confinement Experiments in Multipole/Surmac," in Plasma Physics and Controlled Nuclear Fusion Research 1981, Vol. 2, page 709, IAEA.
136. A.M Howald, D.B. Baker, J. deGrassie, T.E. Evans, H.R. Garner, A.W. Leonard, L.S. Peranich, R. LaHaye, A. Mohri, Y. Hamada, K. Ida, O. Kaneko, K. Kawahata, S. Kitagawa, T. Kuroda, K. Madai, S. Morita, Y. Ogawa, S. Okamura, K.N. Sato, M. Sakamoto, H. Yamada, K. Yamazaki, T. Watari, the ICRF, NBI and JIPP T-IU Operations groups, The Interisland Pump Limiter of JIPP T-IIU, Nuclear Fusion